Research Publications 

List of Publications in 2015

  1. Choudhary, V., Garg, S., Chourasia, R., Hasnani, J. J., Patel, P. V., Shah, T. M., Bhatt, V. D., Mohapatra, A., Blake, D. P. and Joshi, C. G. (2015) Transcriptome analysis of the adult rumen fluke Paramphistomum cervi following next generation sequencing, Gene 570(1): 64-70.
  2. Kushwaha, B., Kumar, R., Agarwal, S., Pandey, M., Nagpure, N. S., Singh, M., Srivastava, S., Das, P., Sahoo, L., Jayasankar, P., Meher, P. K., Shah, T. M., Patel, A. B., Patel, N., Koringa, P. G., Das, S. P., Patnaik, S., Bit, A., Iquebal, M. A., Kumar, D., Jena, J. K. and Joshi, C. G. (2015) Assembly and variation analyses of Clarias batrachus mitogenome retrieved from WGS data and its phylogenetic relationship with other catfishes, Meta gene 5: 105-114.
  3. Parmar, N. R., J. I. Nirmal Kumar, Joshi, C. G. (2015) Deep insights into carbohydrate metabolism in the rumen of mehsani buffalo at different diet treatments, Genomics Data
  4. Das, S. P., Bit, A., Patnaik, S., Sahoo, L., Meher, P. K., Jayasankar, P., Saha, T. M., Patel, A. B., Patel, N., Koringa, P. G., Agarwal, S., Pandey, M., Srivastava, S., Kushwaha, B., Kumar, R., Nagpure, N. S., Iquebal, M. A., Jaiswal, S., Kumar, D., Jena, J. K., Das P. and Joshi, C. G. (2015) Low-depth shotgun sequencing resolves complete mitochondrial genome sequence of Labeo rohita, Mitochondrial DNA 1-2.
  5. Parasharya, B. M., Rank, D. N., Harper, D. M., Crosa, G., Zaccara, S., Patel, N., Joshi, C. G. (2015) Long-distance dispersal capability of Lesser Flamingo Phoeniconaias minor between India and Africa: genetic inferences for future conservation plans, Ostrich 1-9.
  6. Patel, R., Kunjadia, P., Kunjadia, A. and Joshi, C. G. (2015) IDENTIFICATION OF PUTATIVE DRUG TARGETS IN MASTITIS CAUSING Staphylococcus aureus BY IN SILICO APPROACH, International Journal of Pharmacy and Pharmaceutical Sciences 7(9).
  7. Parmar, N. R., NirmalKumar, J. I. and Joshi, C. G. (2015) Exploring diet-dependent shifts in methanogen and methanotroph diversity in the rumen of Mehsani buffalo by a metagenomics approach, Frontiers in Life Science 1-8.
  8. Raman, S., PavanKumar, A., Koringa, P. G., Patel, N., Shah, T. M., Singh, R. K., Gopal Krishna, Gireesh-Babu, P., Chaudhari, A., Lakra, W. S. and Joshi, C. G. (2015) Ion torrent next-generation sequencing reveals the complete mitochondrial genome of endangered mahseer Tor khudree (Sykes, 1839), Mitochondrial DNA1-2.
  9. Senan, S., Prajapati, J. B. and Joshi, C. G. (2015) Feasibility of Genome-Wide Screening for Biosafety Assessment of Probiotics: A Case Study of Lactobacillus helveticus MTCC 5463 Probiotics and Antimicrobial Proteins1-10.
  10. Mangrola, A., Dudhagara, P., Koringa, P. G., Parmar, M., Patel, R. and Joshi, C. G. (2015) Deciphering the microbiota of Tuwa hot spring, India using shotgun metagenomic sequencing approach Genomics Data4: 153-155.
  11. Mangrola, A. V., Dudhagara, P., Koringa, P. G., Patel, R. K. and Joshi, C. G. (2015) Shotgun metagenomic sequencing based microbial diversity assessment of Lasundra hot spring, India Genomics Data4: 73-75.
  12. Rasal, K. D., Shah, T. M., Vaidya, M., Jakhesara, S. J. and Joshi, C. G. (2015) Analysis of consequences of non-synonymous SNP in feed conversion ratio associated TGF-β receptor type 3 gene in chicken Meta gene4: 107-117.
  13. Joshi, B. B., Koringa, P. G., Mistry, K. N., Patel, A. K., Gang, S. and Joshi, C. G. (2015) In silico analysis of functional nsSNPs in human TRPC6 gene associated with steroid resistant nephrotic syndrome Gene
  14. Shah, B., Jain, K., Patel, N., Pandit, R., Patel, A., Madamwar, D. and Joshi, C. G. (2015) Draft genome sequence of Paenibacillus sp. strain DMB20, isolated from Alang ship-breaking yard, which harbors genes for xenobiotic degradation Genome announcements3(3): e00554-15.
  15. Pandya, G. M., Rank, D. N., Kharadi, V. B., Bramkshtri, B. P., Vataliya, P. H., Desai, P. M., Solanki, J. V. and Joshi, C. G. (2015) Genetic analysis of body weight traits of Surti buffalo. Buffalo Bulletin (June 2015)34(2).
  16. Nathani, N. M., Duggirala, S. M., Chandrashekar, M., Kothari, R. K. and Joshi C. G. (2015) Isolation of chitinolytic Clostridium sp NCR from mehsani buffalo rumen, its genomic analysis and potential role in rumen, Genomics Data
  17. Patel, S. M., Koringa, P. G., Reddy, B. B., Nathani, N. M. and Joshi, C. G. (2015) In silico analysis of consequences of non-synonymous SNPs of Slc11a2 gene in Indian bovines, Genomics Data
  18. Dande, S. S., Bhatt, V. D., Patil, N. V. and Joshi, C. G. (2015) The camel faecal metagenome under different systems of management: phylogenetic and gene-centric Approach, Livestock Science
  19. Upadhyay, M. R., Patel, A. B., Subramanian, R. B., Shah, T. M., Jakhesara, S. J., Bhatt, V. D., Koringa, P. G., Rank, D. N. and Joshi, C. G. (2015) Single nucleotide variant detection in Jaffrabadi buffalo (Bubalus bubalis) using high-throughput targeted sequencing, Frontiers in Life Science1-8.
  20. Iquebalsarika, M. A., Mukhopadhyay, C. S., Koringa, P. G., Rai, A., Dinesh Kumar and Joshi, C. G. (2015) Genome Annotation in Prokaryotes and Eukaryotes, Bioinformatic Approaches for Livestock Genome Analysis
  21. Patel, R., Mevada, V., Prajapati, D., Dudhagara, P., Koringa, P. G. and Joshi, C. G. (2015) Metagenomic sequence of saline desert microbiota from wild ass sanctuary, Little Rann of Kutch, Gujarat, India, Genomics Data3: 137-139.
  22. Kumari, R., Rank, D. N., Kumar, S., Lal, S. V. and Joshi, C. G. (2015) REAL TIME PCR-AN APPROACH TO DETECT MEAT ADULTERATION, International Buffalo Information Center (IBIC) BUFFALO BULLETIN34(1):124.
  23. Patel, U. A., Patel, A. K. and Joshi, C. G. (2015) Stable suppression of myostatin gene expression in goat fetal fibroblast cells by lentiviral vector‐mediated RNAi, Biotechnology progress31(2): 452-459.
  24. Patel, S. M., Koringa, P. G., Nathani, N. M., Patel, N. V., Shah, T. M. and Joshi, C. G. (2015) Exploring genetic polymorphism in innate immune genes in Indian cattle (Bos indicus) and buffalo (Bubalus bubalis) using next generation sequencing technology, Meta Gene3: 50-58.
  25. Manjunath, S., Gandham, R., Mishra, B. P., Mishra, B., Sahoo, A. P., Tiwari, A. K., Rajak, K. K., Janga, S. C. and Joshi, C. G. (2015) Genomic analysis of host–Peste des petits ruminants vaccine viral transcriptome uncovers transcription factors modulating immune regulatory pathways, Veterinary research46(1): 15.
  26. Singh, K. M., Patel, A. K., Shah, R. K., Reddy, B. and Joshi, C. G. (2015) Potential functional gene diversity involved in methanogenesis and methanogenic community structure in Indian buffalo (Bubalus bubalis) rumen, Journal of applied genetics1-16.
  27. Parmar, N. R., JI, N. K. and Joshi, C. G. (2015) Advancements in Bovine Rumen Microbial Ecology: A Review, Int. J. Curr. Microbiol. App. Sci4(7): 105-121.
  28. Singh, K. M., Bagath, M., Chikara, S. K., Kothari, R. K. and Joshi, C. G. (2015) Metagenomic Approaches in Understanding the Rumen Function and Establishing the Rumen Microbial Diversity, Climate Change Impact on Livestock: Adaptation and Mitigation221-237.
  29. Patel, R., Mevada, V., Prajapati, D., Dudhagara, P., Koringa, P. G. and Joshi, C. G. (2015) Metagenomic sequence of saline desert microbiota from wild ass sanctuary, Little Rann of Kutch, Gujarat, India, Genomics Data3: 137-139.
  30. Vaidya, Y., Patel, S., Patel, R., Kunjadia, A. and Joshi, C. G. (2015) Exploring the microbiota of human milk using the culture-dependent method, International Journal3(5): 462-471.
  31. Viswanathan, M. S., Arularasan, S., Patel, A. K., Chandrashekar, M., Nathani, N. M., Shah, R. K., Rank, D. N., Balasubramanian,T. and Joshi, C. G. (2015) Cytotoxic Effect of Venom Produced in Vitro from Primary Culture of Conusbiliosus Venom Duct Cells on HEK 293t Cells , Advances in Biological Research9(3): 133-139.
  32. Patel, K., Vaidya, Y., Patel, S., Kunjadia, A. and Joshi, C. G. (2015) Isolation and Characterization of Cellulase Producing Bacteria from Rumen Fluid, International Journal3(5): 1103-1112.
  33. Nathani, N. M., Duggirala, S. M., Chandrashekar, M., Kothari, R. K. and Joshi, C. G. (2015) Isolation of chitinolytic Clostridium sp. NCR from Mehsani buffalo rumen, its genomic analysis and potential role in rumen, Genomics Data5: 109-111.
  34. Ranjan, R*, Bhong, C. D., Parmar, S. N. S. and Joshi C. G. (2015) Molecular characterization of 3’ UTR of Nramp1 gene in Gaolao breed of cattle, Indian Journal of Animal Research49(1): 31-35.
  35. Patel, A. B., Patel, A. K., Shah, M. P., Parikh, I. K. and Joshi, C. G. (2015) Isolation and characterization of novel multifunctional recombinant family 26 glycoside hydrolase from mehsani buffalo rumen metagenome, Biotechnology and Applied BiochemistryDOI: 10.1002/bab.1358.
  36. Singh, K. M., Jisha, T. K., Reddy, B., Parmar, N. R., Patel, A., Patel, A. K. and Joshi, C. G. (2015) Microbial profiles of liquid and solid fraction associated biomaterial in buffalo rumen fed green and dry roughage diets by tagged 16S rRNA gene pyrosequencing, Molecular biology reports 42(1): 95-103.
  37. Senan, S., Prajapati, J. B. and Joshi, C. G. (2015) Whole‐genome based validation of the adaptive properties of Indian origin probiotic Lactobacillus helveticus MTCC 5463, Journal of the Science of Food and Agriculture95(2): 321-328.

List of Publications in 2014

  1. Jakhesara, S. J., Bhatt, V. D., Patel, N. V., Prajapati, K. S., and Joshi C. G.(2014)Isolation and characterization of H9N2 influenza virus isolates from poultry respiratory disease outbreak. SpringerPlus 3(1): 196.
  2. Bhatt, V.D., Kunjadia, A.P., Bhatt,K.D., Sheth, N.R. and Joshi,C.G. (2014). Analysis of virulence associated and antibiotic resistance genes of microbes in subclinical mastitis affected cattle milk by pyrosequencing approach. Journal of Veterinary Sciences and Medical Diagnosis (Accepted).
  3. Bhatt, V.D., Shah, T.M., Nauriyal, D.S., Kunjadia, A.P. and Joshi, C.G. (2014). Evaluation of a Topical Herbal Drug for Its In-Vivo Immunomodulatory Effect on Cytokines Production and Antibacterial Activity in Bovine Subclinical Mastitis. An International Quarterly Journal of Research in Ayurveda (Accepted).
  4. Singh KM, Reddy B, Patel AK, Panchasara HJ, Parmar NR, Patel AB, Shah TM, Bhatt VD and Joshi CG (2014) Metagenomic analysis of buffalo rumen microbiome: Effect of roughage diet on Dormancy and Sporulation genes. Meta Gene 2, 252-268.
  5. Ambalam, P.; Pithva, S.; Kothari, C.; Kothari, R.; Parmar, N.; Nathani, N. M.; Koringa, P. G.; Joshi, C. G.; Dave, J. M. and Vyas, B. R. (2014). Insight into the Draft Genome Sequence of Human Isolate Lactobacillus rhamnosus LR231, a Bacterium with Probiotic Potential. Genome announcements 2(1).
  6. Faldu, P. R.; Kothari, V. V.; Kothari, C. R.; Rawal, C. M.; Domadia, K. K.; Patel, P. A.; Bhimani, H. D.; Raval, V. H.; Parmar, N. R.; Nathani, N. M.; Koringa, P. G.; Joshi, C. G. and Kothari, R. K. (2014). Draft Genome Sequence of Textile Azo Dye-Decolorizing and -Degrading Pseudomonas aeruginosa Strain PFK10, Isolated from the Common Effluent Treatment Plant of the Ankleshwar Industrial Area of Gujarat, India. Genome announcements 2(1).
  7. Patel, A. K.; Tripathi, A. K.; Patel, U. A.; Shah, R. K. and Joshi, C. G. (2014). Myostatin knockdown and its effect on myogenic gene expression program in stably transfected goat myoblasts. In vitro cellular & developmental biology. Animal 10.1007/s11626-014-9743-4.
  8. NM Nathani, SM Duggirala, VD Bhatt, J KaPatel, CG Joshi (2014) Genomic analysis of a novel strain of Bacillus nealsonii, isolated from Surti buffalo rumen Advances in Bioscience and Biotechnology 5, 235.
  9. Patel, P. A.; Kothari, V. V.; Kothari, C. R.; Faldu, P. R.; Domadia, K. K.; Rawal, C. M.; Bhimani, H. D.; Parmar, N. R.; Nathani, N. M.; Koringa, P. G.; Joshi, C. G. and Kothari, R. K. (2014). Draft Genome Sequence of Petroleum Hydrocarbon-Degrading Pseudomonas aeruginosa Strain PK6, Isolated from the Saurashtra Region of Gujarat, India. Genome announcements 2(1).
  10. Pitta, D. W.; Kumar, S.; Veiccharelli, B.; Parmar, N.; Reddy, B. and Joshi, C. G. (2014). Bacterial diversity associated with feeding dry forage at different dietary concentrations in the rumen contents of Mehshana buffalo (Bubalusbubalis) using 16S pyrotags. Anaerobe 25: 31-41.
  11. Siddappa, M.; Gandham, R. K.; Sarsani, V.; Mishra, B. P.; Mishra, B.; Joshi, C. G.; Sahoo, A. P.; Tiwari, A. K. and Janga, S. C. (2014). Whole-genome sequence of sungri/96 vaccine strain of peste des petitsruminants virus. Genome announcements 2(1).
  12. Singh, K. M.; Shah, T. M.; Reddy, B.; Deshpande, S.; Rank, D. N. and Joshi, C. G. (2014). Taxonomic and gene-centric metagenomics of the fecal microbiome of low and high feed conversion ratio (FCR) broilers. Journal of applied genetics 55(1): 145-154.
  13. Puttalakshamamma GC, Ramani UV, Singh KM, Patel AK, Patel AI and Joshi CG (2014) Genetic characterization of paramphistomes of buffalo by HAT-RAPD analysis. Turkish Journal of Veterinary and Animal Sciences 38. doi:10.3906/vet-1204-43
  14. Tripathi, A. K.; Patel, A. K.; Shah, R. K.; Patel, A. B.; Shah, T. M.; Bhatt, V. D. and Joshi, C. G. (2014). Transcriptomic dissection of myogenic differentiation signature in caprine by RNA-Seq. Mechanisms of development 132: 79-92.
  15. Bhanderi, B. B.; Jhala, M. K.; Ahir, V. B.; Bhatt, V. D; Joshi, C. G. (2014). Cultural and metagenomic based identification of a microbiome from subclinical mastitis in cows. Vet. arhiv. 84: 215-228.
  16. Jawale, C. V.; Shabir, N.; Bhong, C. D.; Tripathi, A. K.; Patel, H.; Rank, D. N.; Joshi, C. G. (2014) Characterization of SNPs in Oxidized Low density Lipoprotein Receptor (OLR1) gene in Mehsana and Banni breeds of buffalo. Biomedical Research. 25(3): 303-306.
  17. Rana, D. G., Patel, A., Goyal, R. K. and Joshi, C. G. (2014) Possible involvement of altered expression of BDNF exon II gene and specific dopamine receptors in simvastatin induced beneficial effects in depression, Molecular Cytogenetics, 7(1): 1-1.
  18. Pandit, R. J., Kunjadia, P. D., Mukhopadhyaya, P. N., Nagee, A. H. and Joshi, C. G. (2014) Isolation, molecular characterization and predatory activity of two Indian isolates of nematode-trapping fungi, Applied Biological Research 16(1): 10-20.
  19. Shabir, N., Jawale, C. V., Chikan, N. A., Bhong, C. D., Rank, D. N. and Joshi, C. G. (2014) Identification of transition bias in oxidized low density lipoprotein receptor 1 gene in buffalo, Veterinary World 7(3): 135-140.
  20. Parmar N. R, Solanki J. V, Patel A. B, Shah T. M, Patel A. K, Parnerkar, S., Kumar J. I. and Joshi, C. G. (2014) Metagenome of Mehsani Buffalo Rumen Microbiota: An Assessment of Variation in Feed-Dependent Phylogenetic and Functional Classification, Journal of molecular microbiology and biotechnology 24(4): 249-261.
  21. Deshpande, M., Rank D. N., Vataliya P. H. and Joshi, C. G. (2014) Study of leptin gene polymorphism in Mehsana buffaloes (Bubalus bubalis). Buffalo Bulletin 33(1): 115-119.
  22. Senan, S., Prajapati J. B., Bell, J. B. and Joshi, C. G. (2014) Comparative genome-scale analysis of niche- based stress-responsive genes in Lactobacillus helveticus strains, Genome 57(4): 185-192.
  23. Pal, S., Jhala M. K., Kumar, P. and Joshi C. G. (2014) CLONING AND SEQUENCING OF GC GENE OF BOVINE HERPESVIRUS 1 (BHV1) FROM BUFFALO BULL SEMEN, Buffalo Bulletin (June 2014) 33(2).
  24. Fougat, R., Kulkarni, K, Kumar, S., Patel, A., Sakure, A., Mistry, J. and Joshi, C. G. (2014) Rapid development of microsatellite markers for Plantago ovata Forsk.: using next generation sequencing and their cross-species transferability, Agriculture 4(2): 199-126.
  25. Bhensdadia, D. V., Bhimani, H. D., Nathani, N.M., Rawal, C. M., Koringa, P. G., Kothari, C. R., Kothari, R. K. and Joshi, C. G. (2014) Isolation, Molecular Characterization and Insight into the Genome Sequence of E. coli Bacteriophage ADB-2 from Poultry Fecal Sample, Journal of Next Generation: Sequencing & Applications.
  26. Patel, D. D., Patel, A. K,, Parmar, N. R., Shah, T. M., Patel, J. B., Pandya, P. R. and Joshi, C. G. (2014) Microbial and Carbohydrate Active Enzyme profile of buffalo rumen metagenome and their alteration in response to variation in the diet, Gene 545(1): 88-94.
  27. Singh, K. M., Reddy, B., Patel, D., Patel, A. K., Parmar, N., Patel, A., Patel, J. B. and Joshi, C.G. (2014) High potential source for biomass degradation enzyme discovery and environmental aspects revealed through metagenomics of Indian buffalo rumen, BioMed research international.
  28. Vaid, R. K., Shanmugasundaram, K., Boora, A., Bera, B. C., Shukla, B. N., Anand, T., Singha, H., Riyesh, T., Virmani, N., Barua, S., Ahir, V. B., Koringa, P. G., Sajnani, M. R., Bhat, V. D., Rana, N., Singh, K. P., Malik, P., Singh, R. K. and Joshi, C.G.(2014) Draft genome sequence of Pasteurella multocida subsp. multocida B: 2 strain VTCCBAA264 isolated from Bubalus bubalis in north India, Genome announcements 2(4): e00755-15.
  29. Patel, A. K., Shah, R. K., Parikh, I. K. and Joshi, C. G. (2014) Goat activin receptor type IIB knockdown by artificial microRNAs in vitro, Applied biochemistry and biotechnology 174(1): 424-436.
  30. Reddy, B., Singh, K. M., Patel, A. K., Antony, A., Panchasara, H. J. and Joshi, C. G. (2014) Insights into resistome and stress responses genes in Bubalus bubalis rumen through metagenomic analysis, Molecular biology reports 41(10): 6405-6417.
  31. Patel, A. K., Shah, R. K., Patel, U. A., Tripathi, A. K. and Joshi, C. G. (2014) Goat activin receptor type IIB knockdown by muscle specific promoter driven artificial microRNAs, Journal of biotechnology 187, 87-97.
  32. Rana, D. G., Patel, A. K., Jhala, M. K., Goyal, R. K. and Joshi, C. G. (2014) Alteration in the expression of exon IIC transcripts of brain-derived neurotrophic factor gene by simvastain in chronic mild stress in mice: a possible link with dopaminergic pathway, Canadian journal of physiology and pharmacology 92 (12): 985-992.
  33. Pitta, D. W., Parmar, N. R., Patel, A. K., Indugu, N., Kumar, S., Prajapathi, K. B., Patel, A. B., Reddy, B. and Joshi, C. G. (2014) Bacterial Diversity Dynamics Associated with Different Diets and Different Primer Pairs in the Rumen of Kankrej Cattle, PLoS ONE 9(11).
  34. Jakhesara, S. J., Prasad, V. V. S. P., Pal, J. K., Jhala, M. K., Prajapati, K. S. and Joshi, C. G. (2014) Pathotypic and Sequence Characterization of Newcastle Disease Viruses from Vaccinated Chickens Reveals Circulation of Genotype II, IV and XIII and in India, Transboundary and emerging diseases.
  35. Patel, A. K., Tripathi, A. K., Shah, R. K., Patel, U. A. and Joshi, C. G. (2014) Assessment of goat activin receptor type IIB knockdown by short hairpin RNAs in vitro, Journal of Receptors and Signal Transduction 34(6): 506-512.
  36. Patel, V., Patel, A. K., Parmar, N. R., Patel, A. B., Reddy, B. and Joshi, C. G. (2014) Characterization of the rumen microbiome of Indian Kankrej cattle (Bos indicus) adapted to different forage diet, Applied microbiology and biotechnology 98(23): 9749-9761.
  37. Kundave, V. R., Patel, A. K., Patel, P. V., Hasnani, J. J. and Joshi, C. G. (2014) Qualitative and quantitative assessment of Theileria annulata in cattle and buffaloes Polymerase Chain Reaction. Tropical biomedicine 31(4): 728-735.
  38. Singh, K. M., Pandya, P. R., Tripathi, A. K., Patel, G. R., Parnerkar, S., Kothari, R. K. and Joshi, C. G. (2014) Study of rumen metagenome community using qPCR under different diets, Meta gene 2: 191-199.
  39. Sahu, B. P., Sahoo, L., Mohanty, P., Sundaray, J. K., Jayasankar, P., Das, P. and Joshi, C. G. (2014) Isolation and characterization of polymorphic microsatellite loci in Indian major carp, Catla catla using next-generation sequencing platform, Biochemical Systematics and Ecology 57: 357-362.

 

 

 

 

List of Publications in 2013

  1. D.W. Pitta, S. Kumar, B. Veiccharelli, N. Parmar, B. Reddy, C.G. Joshi, 2013, Bacterial diversity associated with feeding dry forage at different dietary concentrations in the rumen contents of Mehshana buffalo (Bubalus bubalis) using 16S pyrotags, Anaerobe, ( In Press).
  2. P. G. Koringa, S. J. Jakhesara, V. D. Bhatt, C. P. Meshram, A. K. Patel, D. T. Fefar, and C. G. Joshi, 2013, Comprehensive transcriptome profiling of squamous cell carcinoma of horn in Bos indicus, Veterinary and Comparative Oncology, (In press).
  3. K. M. Singh , T. M. Shah , Bhaskar Reddy, S. Deshpande , D. N. Rank , C. G. Joshi, 2013, Taxonomic and gene-centric metagenomics of the fecal microbiome of low and high feed conversion ratio (FCR) broilers, Journal of Applied Genetics, DOI 10.1007/s13353-013-0179-4.
  4. Neelam M Nathani, Amrutlal K Patel, Prakash S Dhamannapatil, Ramesh K Kothari, Krishna M Singh and Chaitanya G Joshi, 2013, Comparative evaluation of rumen metagenome community using qPCR and MG-RAST, AMB Express, 3:55
  5. Singh, KM , A K. Tripathi, PR. Pandya, S Parnerkar, D N. Rank, R K. Kotahri Joshi CG, 2013, Use of Real-Time PCR Technique in Determination of Major Fibrolytic and non Fibrolytic Bacteria Present in Indian Surti Buffaloes (Bubalus bubalis),Polish Journal of Microbiology, Vol. 62, No 2, 195–20
  6. Singh, KM , A K. Tripathi, PR. Pandya, S Parnaekar, D N. Rank, R K. Kotahri Joshi CG, 2013, Molecular Genetic Diversity and Quantitation of Methanogen in Ruminal Fluid of Buffalo (Bubalus bubalis) Fed Ration (Wheat Straw and Concentrate Mixture Diet), Genetics Research International. http://dx.doi.org/10.1155/2013/980191.
  7. Prajapati JB, Nathani NM, Patel AK, Senan S, Joshi CG. 3013.Genomic analysis of dairy starter culture Streptococcus thermophilus MTCC 5461. J Microbiol Biotechnol. 23(4):459-66.
  8. Shah TM, Patel AK, Bhatt VD, Tripathi AK, Shah S, Shankar V, Joshi CG. 2013. The landscape of alternative splicing in buccal mucosa squamous cell carcinoma. Oral Oncol. 49(6):604-10.
  9. Bhensdadia DV, Bhimani HD, Rawal CM, Kothari VV, Raval VH, Kothari CR, Patel AB, Bhatt VD, Parmar NR, Sajnani MR, Koringa PG, Joshi CG, Singh SP, Kothari RK .2013. Complete Genome Sequence of Escherichia Phage ADB-2 Isolated from a Fecal Sample of Poultry. Genome Announc.;1(2):e0004313. doi: 10.1128
  10. Jakhesara SJ, Koringa PG, Joshi CG. 2013.Identification of novel exons and transcripts by comprehensive RNA-Seq of horn cancer transcriptome in Bos indicus. J Biotechnol. 10;165(1):37-44
  11. Tripathi AK, Aparnathi MK, Patel AK, Joshi CG. 2013. In vitro silencing of myostatin gene by shRNAs in chicken embryonic myoblast cells.. Biotechnol Prog. ;29(2):425-31 1.
  12. Bhatt VD, Dande SS, Patil NV, Joshi CG. 2013.Molecular analysis of the bacterial microbiome in the forestomach fluid from the dromedary camel (Camelus dromedarius). Mol Biol Rep. 40(4):3363-71
  13. Tripathi AK, Ramani UV, Patel AK, Rank DN, Joshi CG. 2013. Short hairpin RNA-induced myostatin gene silencing in caprine myoblast cells in vitro. Appl Biochem Biotechnol.,169(2):688-94.
  14. Jakhesara SJ, Koringa PG, Bhatt VD, Shah TM, Vangipuram S, Shah S, Joshi CG. 2013. RNA-Seq reveals differentially expressed isoforms and novel splice variants in buccal mucosal cancer. Gene. 516(1):24-32.
  15. Patel AK, Bhatt VD, Tripathi AK, Sajnani MR, Jakhesara SJ, Koringa PG, Joshi CG. 2013.Identification of novel splice variants in horn cancer by RNA-Seq analysis in Zebu cattle. Genomics. 101(1):57-63.
  16. Tripathi AK, Solanki JV, Joshi CG. 2013.H19 gene methylation study in Indian buffalo (Bubalus bubalis). Vet Res Commun. ,37(1):29-35
  17. FitaL. ,M .M. Trivedi, A.M. Patel, B. Tassew and C.G.Joshi, 2013, Determinants of Technical Efficiency of the Dairy Farmers in Ada’a District of Oromia State, Ethiopia, Iranian Journal of Applied Animal Science .(1), 59-65
  18. Sajnani M R., Bhatt V.D. and Joshi C.G. 2013, Comparing SNPs Identification by CLC and Seqman from transcriptome sequencing data, International Journal of Computational Biology, 4, 1, -56-60.
  19. Nandre R. M., Fatima Sh., Bhupal G., Derashri H. J., and Joshi C. G. 2013, Assessment of variations in Indian Bubalus bubalis seminal plasma proteins during winter and summer seasons, Iranian Journal of Veterinary Research, Vol. 14, No. 1,1-8
  20. Mansi K. A., Patel J.A., Tripathi1A. K., Barvalia D. R., and Joshi C. G. 2013. In Vitro Osteogenic Potential of Canine Adipose Derived Stem Cells, Journal of Stem Cells, Volume 7, Number 4
  21. K. M. Singh, P. R. Pandya, A. K. Tripathi, G. R. Patel, S. Parnerkar, R. K. Kothari, C. G. Joshi, 2013. Molecular diversity of protozoa in rumen of Indian buffalo (Bubalus bubalis). Agric Res, DOI 10.1007/s40003-013-0071-9
  22. Koringa PG, Jakhesara SJ, Bhatt VD, Patel AB, Dash D, Joshi CG. 2013. Transcriptome analysis and SNP Identification in SCC of Horn in (Bos indicus) Indian cattle. Gene. doi:pii: S0378-1119(13)
  23. Kothari VV, Kothari RK, Kothari CR, Bhatt VD, Nathani NM, Koringa PG, Joshi CG, Vyas BR. 2013 . Genome Sequence of Salt-Tolerant Bacillus safensis Strain VK, Isolated from Saline Desert Area of Gujarat, India. Genome Announc. 2013 Sep 5;1(5). doi:pii: e00671-13
  24. Jaina S Patel, Manisha M Patel, Prakash G Koringa, Tejas M Shah, Amrutlal K Patel, Ajai K Tripathi, Anila Mathew, Mohan M Rajapurkar, Chaitanya G Joshi, 2013, Human leukocyte antigen alleles, genotypes and haplotypes frequencies in renal transplant donors and recipients from West Central India, Indian Journal of Human Genetics, DOI:10.4103/0971-6866.116122
  25. H. H. Mehta, A. K .Patel, K N. Nandasana, U.V. Ramani, P.G.Koringa, R.G.Shah, D.R. Bharvalia, N Kelawala, D.B. Patel, D.N Rank, C.G. Joshi, K. M. Panchal, R.K. Kothari, 2013, Histology and Histomorphology of Hormone treated Surati Buffalo Udder tissue, American Journal of Animal and Veterinary Science, 8 (2): 66-72.
  26. Reena Patel, Yogesh Patel, Chaitanya Joshi, Anju Prasant Kunjadia, 2013, A Potential Agent to Cure Infectious Mastitis in Bovine Animals, International journal of phytomedicine Vol 5,No 3
  27. Neelam M. Nathani, Srinivas M. Duggirala, Vaibhav D. Bhatt, Jay KaPatel and Chaitanya G. Joshi1, 2013, Genomic analysis of Bacillus nealsonii AAU1 strain nov., isolated from Surti buffalo rumen, Advances in Bioscience and Biotechnology, (Accepted.)
  28. H.H. Mehta, A.K. Patel, K.N. Nandasana, U.V. Ramani, P.G. Koringa, R.G. Shah, D. R.Barvalia, N.H. Kelawala, D.B. Patil, D.N. Rank, C.G.Joshi, K.M. Panchal and R.K. Kothari, 2013, The effect of hormone treatmenton dry surati buffalo mammary gland. International Journal of Pharma and Biosciences. 4(1): (B) 298-308

List of Publication in 2012

  1. Bhatt, V.D., Ahir, V.B., Koringa, P.G., Jakhesara, S.J., Rank, D.N., Nauriyal, D.S., Kunjadia, A.P., Joshi, C.G., (2012). Milk microbiome signatures of subclinical mastitis-affected cattle analysed by shotgun sequencing. Journal of Applied Microbiology 112, 639-650.
  2. Jakhesara, S.J., Ahir, V.B., Padiya, K.B., Koringa, P.G., Rank, D.N., Joshi, C.G., (2012). Tissue-specific Temporal Exome Capture Revealed Muscle-specific Genes and SNPs in Indian Buffalo (Bubalus bubalis). Genomics, Proteomics & Bioinformatics / Beijing Genomics Institute 10, 107-113.
  3. Minakshi, P., Singh, R., Ranjan, K., Kumar, P., Joshi, C.G., Reddy, Y.K., Prasad, G., (2012). Complete genome sequence of bluetongue virus serotype 16 of goat origin from India. Journal of Virology 86, 8337-8338.
  4. Prajapati, J.B., Khedkar, C.D., Chitra, J., Suja, S., Mishra, V., Sreeja, V., Patel, R.K., Ahir, V.B., Bhatt, V.D., Sajnani, M.R., Jakhesara, S.J., Koringa, P.G., Joshi, C.G., (2012). Whole-genome shotgun sequencing of Lactobacillus rhamnosus MTCC 5462, a strain with probiotic potential. Journal of Bacteriology 194, 1264-1265.
  5. Singh, A., Singh, R.S., Upadhyay, S.N., Joshi, C.G., Tripathi, A.K., Dubey, S.K., (2012). Community structure of methanogenic archaea and methane production associated with compost-treated tropical rice field soil. FEMS Microbiology Ecology doi: 10.1111/j.1574-6941.2012.01411.x.
  6. Singh, K.M., Ahir, V.B., Tripathi, A.K., Ramani, U.V., Sajnani, M., Koringa, P.G., Jakhesara, S., Pandya, P.R., Rank, D.N., Murty, D.S., Kothari, R.K., Joshi, C.G., (2012). Metagenomic analysis of Surti buffalo (Bubalus bubalis) rumen: a preliminary study. Molecular Biology Reports 39, 4841-4848.
  7. Singh, K.M., Tripathi, A.K., Pandya, P.R., Parnerkar, S., Rank, D.N., Kothari, R.K., Joshi, C.G., (2012). Methanogen diversity in the rumen of Indian Surti buffalo (Bubalus bubalis), assessed by 16S rDNA analysis. Research in Veterinary Science 92, 451-455.
  8. Tripathi, A.K., Aparnathi, M.K., Vyavahare, S.S., Ramani, U.V., Rank, D.N., Joshi, C.G., (2012). Myostatin gene silencing by RNA interference in chicken embryo fibroblast cells. Journal of Biotechnology. 160(3-4): 140-145.
  9. Tripathi, A.K., Koringa, P.G., Jakhesara, S.J., Ahir, V.B., Ramani, U.V., Bhatt, V.D., Sajnani, M.R., Patel, D.A., Joshi, A.J., Shanmuga, S.J., Rank, D.N., Joshi, C.G., (2012). A preliminary sketch of horn cancer transcriptome in Indian zebu cattle. Gene 493, 124-131.
  10. Tripathi, S.M., Thaker, A.M., Joshi, C.G., Sankhala, L.N., (2012). Acephate immunotoxicity in White Leghorn cockerel chicks upon experimental exposure. Environmental Toxicology and Pharmacology 34, 192-199.
  11. Tripathi A. K., Singh K. M., Vaze M. N., Ramani U. V., Rank D.N. and Joshi C.G. (2012). Full length cDNA synthesis of differentially displayed ESTs during lactation in the Indian buffalo (Bubalus bubalis),Turkish Journal of Veterinary and Animal Sciences 36(1).
  12. Vaidya M. B., Sajnani M. R., Ramani U. V., Tripathi A. K., Bhatt V. D., Patel J. S., Manisha M. P. and Joshi C.G. (2012). A preliminary analysis of repetitive sequence organisation in Bubalus bubalis genome, Indian Journal of Biotechnology 11(1):62-66.
  13. Prajapati J. B., Khedkar C. D., Chitra J., Suja S., Mishra V., Sreeja V., Patel R. K., Ahir V. B., Bhatt V. D., Sajanani M. R., Jakhesara S. J., Koringa P. G., Joshi C. G. (2012). Whole-Genome Shotgun Sequencing of Lactobacillus rhamnosus MTCC 5462, a Strain with Probiotic Potential. Journal of Bacteriology 194(5):1264.

List of Publication in 2011

  1. Ahir V. B., Roy A., Jhala M. K., Bhanderi B. B. , Mathakiya R. A., Bhatt V. D., Padiya K. B., Jakhesara S. J., Koringa P. G. and C. G. Joshi (2011). Genome Sequence of Pasteurella multocida subsp. gallicida Anand1_poultry. Journal of Bacteriology, Oct. 2011, p. 5604
  2. Prajapati J. B., Khedkar C. D., Chitra J., Suja S., Mishra V., Sreeja V., Patel R. K., Ahir V. B., Bhatt V. D., Sajnani M. R., Jakhesara S. J., Koringa P. G. and Joshi C. G. (2011) Whole-Genome Shotgun Sequencing of an Indian-Origin Lactobacillus helveticus Strain, MTCC 5463, with Probiotic Potential. Journal of Bacteriology, Aug. 2011, p. 4282–4283.
  3. Nandre R., Derashri H., Joshi C.G (2011). Evaluation of buffalo bull spermatozoal DNA damage using single cell gel electrophoresis. International Journal of Life Science & Pharma Research Vol 1/Issue 1.
  4. Nandre R., Joshi C.G., Derashri H., (2011). Pregnancy proteins: early indication of pregnancy diagnosis in farm animals. International Journal of Life Science & Pharma Research Vol 2/Issue 1.
  5. Kurkute A.S., Tripathi A K., Nadeem.S, Jawale C.V., Ramani U.V., Pande A.M., Rank D.N., and Joshi C.G. (2011). Molecular cloning and characterization of rabbit myostatin gene. The IIOAB Journal. Vol. 2; Issue 5; 2011:1–7.
  6. Ranjan R, Bhong C.D., Chavan K.V., Parmar S.N.S., Joshi C.G.(2011). DNA polymorphism of 3’ UTR of Nramp1 gene in Malvi breed of cattle. Veterinary Archive 81 (3), 349-357.
  7. Ranjan R., Bhong C.D., Chavan K.V., Parmar S.N.S., Joshi C.G. (2011). Molecular Characterization of exon 2 of Leptin gene in Bos- indicus. Journal of Advanced Veterinary Research Vol 1, 212-214.
  8. Jadeja R.N., Thounaojam M.C., Ramani U.V., Devkar R.V., Ramachandran A.V. (2011). Anti-obesity potential of Clerodendron glandulosum Coleb leaf aqueous extract. Journal of Ethnopharmacology 135 (2011) 338–343.
  9. Ghosh A., Savaliya F. P., Rank D. N., Joshi C. G., Khanna K. and Taraphder S. (2011). Genetics of TGF-β3 gene polymorphism in inbred synthetic white leghorn breed of poultry. Journal of Evolutionary Biology Research Vol. 3(2), pp. 19-21.
  10. Tripathi A. K., Ramani U. V., Rank D. N., Joshi C. G. (2011). In vitro expression profiling of myostatin, follistatin,decorin and muscle-specific transcription factors in adult caprine contractile myotubes. The Journal of Muscle Research and Cell Motility DOI 10.1007/s10974-011-9245-x.
  11. Ramani U.V., Tripathi A.K., Vaze M. N., Nandasana K. N., Koringa P. G., Rank D. N. and Joshi C. G. (2011). Somatotropin-mediated gene expression profiling of differentially displayed ESTs during lactation in Indian buffalo (Bubalus bubalis). Journal of Dairy Research 78 326–334.
  12. Ranjan R, Bhong C.D., Chavan K.N., Parmar S.N.S. and Joshi C.G. (2011). Polymorphism in 3’ UTR region of Slc11a1 gene in Indian breeds of cattle. Veterinary arhiv 81 (3), 349-357.
  13. Patel J.M., Jhala M.K., Soni P., Shabir N., Pandya P.R., Singh K.M., Rank D.N. and Joshi C.G.(2011). Molecular Characterization and Diversity of Rumen Bacterial Flora in Indian Goat by 16S rDNA Sequencing. VetScan Vol 6 No.1. article77.
  14. Singh K.M., Pandya P.R., Parnerkar S., Tripathi A.K., Rank D.N., Kothari R.K., Joshi C.G. (2011). Molecular Identification of Methanogenic Archaea from Surti Buffaloes (Bubalus bubalis), Reveals More Hydrogenotrophic Methanogens Phylotypes. Brazilian Journal of Microbiology 42, 132-139.

List of Publication in 2010

  1. Jakhesara S.J., Rank D.N., Kansara J.D., Parikh R.C., Vataliya P.H. and Solanki J.V. (2010). Microsatellite DNA typing for Assessment of Genetic Variability in the Mehsani buffalo breed of India. Buffalo Bulletin Vol.29 No.4
  2. Megha K, Jhala M.K., Joshi B.P., Khanna K., Joshi C.G. (2010). Disease resistance pattern against Infectious Bursal Disease in Chicken. Indian Veterinary Journal vol. 87, no.2, pp. 111-113.
  3. Dhaygude V.S.,Joshi B.P.,Joshi C.G., Prajapati K.S. (2010). Mutational analysis of p53 tumour suppressor gene in canine mammary tumours using PCR-SSCP and sequencing. Indian Journal of Veterinary Pathology Volume 34, Issue 2 print ISSN, 0250-4758. Online ISSN, 0973-970X.
  4. Pandya P. R., Singh K. M., Parnerkar S., Tripathi A. K., Mehta H. H., Rank D. N., Kothari R. K. and Joshi C. G.. (2010). Bacterial diversity in the rumen of Indian Surti buffalo (Bubalus bubalis), assessed by 16S rDNA analysis. Journal of Applied Genetics Volume 51, Number 3, 395-402.
  5. Sharma R., Parmar S.N.S., Joshi C.G., Thakur M.S., Bhong C.D. Chudhary M.V (2010).Molecular characterization of Nimari cattle using fluorescently labeled microsatellite markers. Indian Journal of Animal Sciences. Volume 80, Issue 7.
  6. Ahir V.B., Panchal M.T., Tripathi A.K., Koringa P.G. and Joshi C.G. (2010). Genetic Polymorphism in the aldoketo reductase family 1 member b1 (AKR1B1) gene of Murrah buffalo bulls (Bubalus bubalis) Buffalo Bulletin. Vol.29 No.4.
  7. Chavan K.N., Ranjan R., Shah R.R., Bhong C.D., Parmar S.N.S. and Joshi C.G. (2010). Molecular Characterization of ß-Defensins gene in Gaolao Breed of Cattle J. Interacad. 14 (4) 509-514.
  8. Mistry C.N., Dhami A.J., Suthar V.S., Rank D.N., and Joshi C.G. (2010). Effect of Different concentration of Bovine Serum Albumin on invitro maturation of buffalo oocytes Indian Journal of Animal Reproduction 31 (1) 75-78.
  9. Gupta R., Rank D.N., Joshi C.G. (2010). Single-nucleotide primer extension assay of mtDNA to authenticate cattle and buffalo meat. Science Asia 37 170–173.
  10. Gupta R., Rank D.N., Joshi C.G. (2010). Duplex-PCR for Identification and Differentiation of Cattle and Buffalo processed Meat. Journal of Advanced Veterinary Research 1, 1-4.
  11. Jakhesara S.J., Koringa P.G., Ramani U.V., Ahir V.B., Soni P.S., Singh K.M., Tripathi A.K., Bhatt V.D., Patel J.S., Patel M.M., Sajnani M.R., Joshi C.G.(2010). Comparative Study of Tannin Challenged Rumen Microbiome in Goat Using High Throughput Sequencing Technology. Developmental Microbiology and Molecular Biology, ISSN 0976-5867 Volume 1, Number 1 pp. 95-106.
  12. Ahir V.B., Koringa P.G., Bhatt V.D, Ramani U.V., Tripathi A.K., Singh K.M., Dhagat U.M., Patel J.S., Patel M.M., Katudia K.H., Sajnani M.R., Jakhesara S.J. and Joshi C.G. (2010). Metagenomic analysis of Poultry Gut Microbes. Indian Journal of Poultry Science. 45(2): 111-114.
  13. Singh K.M., Pandya P.R., Parnerkar S., Tripathi A.K., Ramani U.V, Koringa P.G., Rank D.N., Joshi C.G. and Kothari R.K. (2010). Methanogenic Diversity Studies within the Rumen of Surti Buffaloes Based on Methyl Coenzyme M Reductase A (mcrA) Genes Point to Methanobacteriales. Polish Journal of Microbiology Vol. 59, No 3, 175-178.
  14. Tripathi A.K., Ramani U.V., Ahir V.B., Rank D.N.and Joshi C.G. (2010). A Modified enrichment protocol for adult caprine skeletal muscle stem cell. Cytotechnology 62(6): 483-488.

List of Publication in 2009

  1. Kale S.S., Rank D.N., Joshi C.G., Yadav B.R., Koringa P.G., Thakkar K.M., Tolenkhombha T.C. and Solanki J.V. (2009). Genetic Diversity among Indian Gir, Deoni and Kankrej cattle breed based on microsatellite markers. IJBNAR 9 (2) 126-129. ISSN 0927-5849.
  2. Javia, B.B., Roy A., Purohit J.H., Joshi C.G., Kalyani I.H. and Bhanderi B.B. (2009). Isolation and invitro antibiotic sensitivity pattern of Pasteurella multocida from animal &avian origin. The Royal Veterinary Journal of India, 5 (I & II). pp. 65-68. ISSN 0973-0443.
  3. Bhanderi B.B., Roy A., Yadav M.M. and Joshi C.G. (2009). PCR based detection of virulence associated genes of Staphylococcus aureus from bovine clinical and subclinical mastitis The Royal Veterinary Journal of India, 5 (I & II). pp. 20-26. ISSN 0973-0443.
  4. Shadma F., Bhatt S.M., Bhong C.D., Rank D.N. and Joshi C.G. (2009). Genetic polymorphism study of IGF-I gene in buffaloes of Gujarat. Buffalo Bulletin, 28 (3). pp. 159-164. ISSN 0125-6726
  5. Chaudhari M.V., Parmar S.N.S., Joshi C.G., Bhong, C.D.,Shadma F. S., Thakur M.S. and Thakur S.S.(2009). Molecular characterization of Kenkatha and Gaolao (Bos ndicus) cattle breeds using microsatellite markers Animal Biodiversity and Conservation 32.2.
  6. Jhala, N. B., Rank, D. N. , Vataliya, P. H., Joshi, C.G., Mehta H.H. and Patil, A.V.(2009). Cloning and Sequencing of The Leptin Gene in Gir Cattle and Mehsana Buffalo Buffalo Bulletin Vol.28 No.1.
  7. Mehta, Timir Y., Prajapati, Laxman M., Mittal, Bharti, Joshi, C.G., Sheth, Patel J. J., Dave D.B., D.M., and Goyal R.K. (2009). Association of HLA B1502 allele and carbamazepine-induced Stevens–Johnson syndrome among Indians. Indian Journal of Demarmatology, Venereology & Laprology, 75 (6). pp. 579-582.
  8. Mathakiya, R.A., Roy, A., Nandasana, K.N., Koringa, P.G. and Joshi, C.G.(2009). Evaluation of a rapid molecular method for detection of Listeria monocytogenes directly from broth culture. Veterinary World, 2 (5). pp. 177-178.
  9. Verma A.., Joshi, C.G., Koringa, P.G. and Nauriyal, D.S. (2009). Defensin gene polymorphism analysis in bovine intramammary infections in cattle and buffaloes of Gujarat. The Indian Journal of Animal Sciences, 79 (3). pp. 300-302.
  10. Jain L.K., A.N., Purohit J.H., Joshi C.G., Rank D.N., Kumar V. and Jain V.K (2009). Detection of bovine herpes virus 1 (BHV-1) infection in semen of Indian breeding bulls by polymerase chain reaction and its characterization by DNA sequencing. Buffalo Bulletin, 28 (2). pp. 76-84.